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Showing :
sample size
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8
votes
17
replies
14k
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WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA
Sample Size
Outliers
updated 8.7 years ago by
mh.manoj
• 0 • written 9.2 years ago by
brohawndg
▴ 150
0
votes
9
replies
4.8k
views
DESeq2 unequal sample sizes
deseq2
deseq
sample size
6.6 years ago
MrHodor
• 0
0
votes
5
replies
2.2k
views
getting sample size for RNAseq experiment
rnaseqpower
sspa
sample size
sequencing
complex-design
updated 8.2 years ago by
m.van_iterson
▴ 20 • written 8.2 years ago by
roser.navarro
• 0
4
votes
5
replies
2.1k
views
sample size determination in microarrays studies with limma analysis
limma
sample size
microarrays
statistical power
6.1 years ago
eleonoregravier
▴ 70
4
votes
1
reply
1.8k
views
Very low EdgeR Pvalues with very small sample size
edger
pvalue
sample size
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
Venu Pullabhatla
▴ 40
0
votes
0
replies
1.6k
views
ATAC-seq: Sample size when pooling sample reads to call peaks
atac-seq
sample size
Peak
Normalize
6.3 years ago
jaime.alvarez.benayas
• 0
3
votes
3
replies
1.6k
views
csaw: how does unequal sample size affect filtering filterWindows step
csaw
differential binding analysis
sample size
independent filtering
statistical power
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
zhangly811
• 0
3
votes
6
replies
1.3k
views
nbinomLRT function all cores usage
deseq2
nbinomLRT
sample size
biocparallel
updated 5.5 years ago by
davide risso
▴ 950 • written 5.5 years ago by
mcalgaro93
• 0
0
votes
4
replies
890
views
DESeq2: Small treatment group, large control group
deseq2
sample size
updated 5.4 years ago by
Michael Love
42k • written 5.4 years ago by
kel.chee86
• 0
9 results • Page
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Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma
by
Shaimaa Gamal
• 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold
by
j.gilbert
• 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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